| # | Title | Length |
|---|
| 1 | Deep Sea Ranch | 4:18 |
| 2 | Mother of the Sea | 2:21 |
| 3 | Encounter | 0:31 |
| 4 | Ura Town | 2:36 |
| 5 | Kumiko | 2:06 |
| 6 | Ponyo and Sosuke | 2:17 |
| 7 | Empty Bucket | 1:30 |
| 8 | Flash Signal | 2:37 |
| 9 | I Become Human! | 1:30 |
| 10 | Fujimoto | 1:34 |
| 11 | Little Sisters | 1:32 |
| 12 | Ponyo's Flight | 1:43 |
| 13 | The Sunflower House in the Storm | 2:20 |
| 14 | Ponyo's Fish Wave | 3:36 |
| 15 | Ponyo and Sosuke 2 | 2:01 |
| 16 | Lisa's House | 3:20 |
| 17 | New Family | 1:09 |
| 18 | Ponyo's Lullaby | 1:29 |
| 19 | Lisa's Determination | 1:33 |
| 20 | Gran Mamare | 2:14 |
| 21 | Night of the Meteor | 2:40 |
| 22 | Hot-bulb Engine Ship | 1:55 |
| 23 | To the Sea of Dipnorhynchus | 1:41 |
| 24 | Fleet March | 2:26 |
| 25 | Baby and Ponyo | 0:33 |
| 26 | Fleet March 2 | 1:14 |
| 27 | Sosuke's Voyage | 2:08 |
| 28 | Sosuke's Tears | 1:02 |
| 29 | Underwater Town | 2:02 |
| 30 | Mother's Love | 0:49 |
| 31 | Tunnel | 1:26 |
| 32 | Toki | 0:48 |
| 33 | Little Sisters' Activities | 1:40 |
| 34 | Song of Praise for Mother and the Sea | 2:15 |
| 35 | Finale | 0:44 |
| 36 | Ponyo on the Cliff by the Sea (Film Version) | 1:36 |
