| 1957 | Music for Brass | Gunther Schuller, John Lewis, Jimmy Giuffre, J.J. Johnson; Dimitri Mitropoulos, Gunther Schuller | 1 |
| 1958 | Modern Jazz Concert | Gunther Schuller, George Russell | 1 |
| 1973 | The Red Back Book | Scott Joplin; The New England Conservatory Ragtime Ensemble, Gunther Schuller | 2 |
| 1980 | Harbison: Piano Concerto / Stock: Inner Space | John Harbison, David Stock; American Composers Orchestra, Gunther Schuller, Robert Miller | 1 |
| 1986 | Piano Concerto | Gershwin / Ferde Grofé; Russell Sherman, Orchestra of St. Luke’s, Gunther Schuller | 1 |
| 1988 | Jumpin' In The Future | Gunther Schuller Featuring Orange Then Blue Special Guest Artist Howard Johnson | 1 |
| 1990 | The Red Back Book / Elite Syncopations | Scott Joplin; The New England Conservatory Ragtime Ensemble, Gunther Schuller, The Southland Stingers | 1 |
| 1991 | Music for Brass | Gunther Schuller, John Lewis, Jimmy Giuffre, J.J. Johnson & Dimitri Mitropoulos | 1 |
| 1991 | Serenade no. 10 in B-flat major, K. 361 / A Musical Joke, K. 522 | Mozart; Chamber Music Society of Lincoln Center, Gunther Schuller | 1 |
| 1992 | Mass in D | John Knowles Paine; Gunther Schuller, Saint Louis Symphony Orchestra, Saint Louis Symphony Chorus, Thomas Peck, Carmen Balthrop, Joy Blackett, Vinson Cole, John Cheek | 1 |
| 1993 | Gershwin, Copland, Schuller, Bloch | Gershwin, Copland, Schuller, Bloch; Minneapolis Symphony Orchestra, Antal Doráti | 1 |
| 1993 | American Contemporaries | John Harbison, Richard Wernick, Gunther Schuller; Emerson String Quartet | 2 |
| 1994 | Carter: Variations for Orchestra / Schuller: Spectra / Babbitt: Correspondences / Cage: Atlas Eclipticalis | Cage, Carter, Babbitt, Schuller; Chicago Symphony Orchestra, James Levine | 2 |
| 1995 | Of Reminiscences and Reflections | Gunther Schuller | 1 |
| 2005 | Turn of the Century Cornet Favorites | Gerard Schwarz, Gunther Schuller, Columbia Chamber Ensemble | 1 |
| 2008 | Journey Into Jazz | Gunther Schuller; Boston Modern Orchestra Project, Gil Rose | 1 |
| 2011 | American Music for Percussion • 1 | Tower, Sandler, Higdon, Rodriguez, Schuller; New England Conservatory Percussion Ensemble, Frank Epstein | 1 |
| 2014 | Stravinsky: Agon / Schuller: Seven Studies on Themes of Paul Klee | Stravinsky, Schuller; Boston Symphony Orchestra, Erich Leinsdorf | 1 |
| — | Beethoven: Symphony no. 5 / Brahms: Symphony no. 1 | Beethoven, Brahms; Gunther Schuller | 1 |
| — | Rozsa: Sonata & Sonatina for Solo Clarinet / Rochberg: Trio for Clarinet, Horn, and Piano / Schuller: Romantic Sonata for Clarinet, Horn, and Piano | Rózsa, Rochberg, Schuller; Larry Combs | 1 |
