| 1961 | Ouvertüre Nr. 2 In H-moll, BWV 1067 / Ouvertüre Nr. 3 In D-dur, BWV 1068 | Johann Sebastian Bach; Aurèle Nicolet, Münchener Bach‐Orchester, Karl Richter | 1 |
| 1983 | J. S. Bach, Sonatas For Flute And Harpsichord Obligato | Aurèle Nicolet & Michio Kobayashi | 1 |
| 1984 | 6 Sonatas for Flute & Continuo | Handel; Aurèle Nicolet, Christiane Jaccottet, Mari Fujiwara | 1 |
| 1984 | 4 Flute Quartets | W.A. Mozart; Aurèle Nicolet, Jean‐Jacques Kantorow, Vladimir Mendelssohn, Mari Fujiwara | 1 |
| 1985 | Flute Concertos | Nielsen, Reinecke, Busoni; Aurèle Nicolet, Gewandhausorchester Leipzig, Kurt Masur | 2 |
| 1985 | Suites for Violoncello Solo Arranged for Flute Solo | Johann Sebastian Bach; Aurèle Nicolet | 1 |
| 1986 | Concertos for Flute and Oboe | Salieri, Cimarosa, Stamitz; Aurèle Nicolet, Heinz Holliger, Academy of St Martin in the Fields, Kenneth Sillito | 1 |
| 1987 | 6 Flute Concertos, op. 10 | Vivaldi; I Musici, Aurèle Nicolet | 2 |
| 1988 | Flöten-Sonaten | Johann Sebastian Bach, Aurèle Nicolet; Karl Richter | 1 |
| 1988 | Concerts Royaux | François Couperin ; Thomas Brandis, Heinz Holliger, Aurèle Nicolet, Josef Ulsamer, Christiane Nicolet, Manfred Sax & Christiane Jaccottet | 1 |
| 1988 | Harfenkonzerte | Louis Spohr, Wolfgang Amadeus Mozart; Christoph Poppen, Ursula Holliger, Aurèle Nicolet, English Chamber Orchestra, Heinz Holliger | 1 |
| 1989 | Les Goûts-Réunis Ou Nouveaux Concerts | François Couperin; Brandis, Holliger, Nicolet, Ulsamer, Strehl, Sax, Jaccottet | 2 |
| 1989 | Flute Concertos | Mozart; Royal Concertgebouw Orchestra Amsterdam, David Zinman, Aurèle Nicolet | 1 |
| 1990 | Melodien / Double Concerto / Chamber Concerto | Ligeti; Nicolet, Holliger, London Sinfonietta, David Atherton | 1 |
| 1990 | Serenade KV 320 "Posthorn" / 2 Marches KV 335 | Mozart; Camerata Academica, Nicolet, Holliger, Thunemann, Sándor Végh | 1 |
| 1994 | Flötenkonzerte des Barock | Vivaldi, Pergolesi, Blavet, Leclair, Woodcock; Aurèle Nicolet, Hans-Martin Linde | 1 |
| 1997 | Oktett / Variationen "Trockne Blumen" | Schubert; Wiener Kammerensemble, Aurèle Nicolet, Karl Engel | 1 |
| 2000 | Konzert in Sanssouci: Musik am preußischen Königshof | Hans-Martin Linde, Aurèle Nicolet, Schola Cantorum Basiliensis, Kammerorchester Emil Seiler, Festival Strings Lucerne | 1 |
| 2017 | Flute Quartets | Mozart; Aurèle Nicolet, Ana Chumachenco, Oscar Lysy, Walter Nothas | 2 |
| — | Overtures nos. 1 & 2 | J. S. Bach; Camerata Bern, Aurèle Nicolet | 1 |
| — | The Complete Sonatas for Flute | J.S. Bach; Aurèle Nicolet | 1 |
| — | Trio Sonatas | J.S. Bach, C.P.E. Bach; Aurèle Nicolet, Heinz Holliger, Christiane Jaccottet, Manfred Sax, Angela Schwartz | 1 |
